Insertion junction: CLIP2.047889_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.047889
Chromosome:chromosome 2
Location:8198931
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g143800 SRH3 SNF2-related DNA/RNA helicase; (1 of 8) IPR000330//IPR001650//IPR014001//IPR027417 - SNF2-related, N-terminal domain // Helicase, C-terminal // Helicase superfamily 1/2, ATP-binding domain // P-loop containing nucleoside triphosphate hydrolase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGCGGCGCGCACCCCGGCAGCCAGCCGCCGCCGCCGCCGGCCAAGCGCC
Internal bar code:AGGGATAGTGGCTGCTAATGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:729
LEAP-Seq percent confirming:68.75
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:GACAGAGGCGTGTGTGTGTA
Suggested primer 2:GTGTGTGTTGGGTTTACGCC