Insertion junction: CLIP2.048035_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.048035
Chromosome:chromosome 9
Location:3560939
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g396624 (1 of 1) IPR000104//IPR001841//IPR002110//IPR016024//IPR020683 - Antifreeze protein, type I // Zinc finger, RING-type // Ankyrin repeat // Armadillo-type fold // Ankyrin repeat-containing domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTATCTTGGGCGCCCTTGCGCCCTGTTCTTCTCGTCGGTGTTGGTCGTT
Internal bar code:AAGAGATCATCGTGCACAAGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:857
LEAP-Seq percent confirming:31.8182
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:CATCCTCCTCATCACCGTCG
Suggested primer 2:TGAGCTGCTGATGGCGTAAA