Insertion junction: CLIP2.048152_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.048152
Chromosome:chromosome 6
Location:2879385
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g800648 (1 of 2) PTHR33033//PTHR33033:SF11 - FAMILY NOT NAMED // RNASE H DOMAIN-CONTAINING PROTEIN intron
Cre06.g800649 (1 of 2) PTHR33033//PTHR33033:SF11 - FAMILY NOT NAMED // RNASE H DOMAIN-CONTAINING PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAACACACGACACAGCCACAAAGGAGCAATGTGCACCCGGACTCGCAAT
Internal bar code:GAAATCATAGTGTGCGCATAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:6364
LEAP-Seq percent confirming:96.6667
LEAP-Seq n confirming:58
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:TCTGCTTCTCCGTTGCCATT
Suggested primer 2:GCAAGCAAGAACCCTGTGTG