Insertion junction: CLIP2.048203_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.048203
Chromosome:chromosome 16
Location:2652341
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g661450 HTV3 (1 of 35) K11253 - histone H3 (H3); Histone H3 variant intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGTGGACCAGCGGCTGACCAGCCTCCTCGCGCAGGCTCGGCCAGGGCGA
Internal bar code:GCTATAGAACTCTCTCGTTCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1002
LEAP-Seq percent confirming:42.8571
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:TGACAACGGTCTGAGCAGTC
Suggested primer 2:CAGGGTACGAGTTGTTGGCT