Insertion junction: CLIP2.048261_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.048261
Chromosome:chromosome 2
Location:4871743
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g109650 GSP1 Gamete-specific plus 1; (1 of 2) IPR001356//IPR008422//IPR009057 - Homeobox domain // Homeobox KN domain // Homeodomain-like CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGCCGGGGTCCGCACCGCCTCGCCCAGGGCCCAGCCCCTCTGTGAAGCT
Internal bar code:GTTGGTGCAGCTTCACGTATTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1250
LEAP-Seq percent confirming:62.069
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:GTGCAGATGCTCAAGCGATG
Suggested primer 2:AGTTGTGGTGGGTACTGCTG