Insertion junction: CLIP2.048296_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.048296
Chromosome:chromosome 16
Location:288799
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g694201 (1 of 1) PTHR12461//PTHR12461:SF46 - HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED // SUBFAMILY NOT NAMED; Cupin- Jumonji-like protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCCCCTTGCTGTTTGCGTTTCCAGCATGACCTTCTTTCCCTTGTTTTTG
Internal bar code:TCTCTACGTATGTCATTGGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2162
LEAP-Seq percent confirming:55.0
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:ACAGGCAGGGCTAACTCAAC
Suggested primer 2:AGGGTGAGGAGGATGAGGAC