Insertion junction: CLIP2.048296_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.048296
Chromosome:chromosome 16
Location:288801
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g694201 (1 of 1) PTHR12461//PTHR12461:SF46 - HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED // SUBFAMILY NOT NAMED; Cupin- Jumonji-like protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTGTGGGTGTATTTGGGTGTGTGCATTGAAGTTGAACTCGGTGTTGAAC
Internal bar code:TCTCTACGTATGTCATTGGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:601
LEAP-Seq percent confirming:90.625
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:AGGGTGAGGAGGATGAGGAC
Suggested primer 2:ACAGGCAGGGCTAACTCAAC