Insertion junction: CLIP2.048342_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.048342
Chromosome:chromosome 3
Location:5261764
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g800345 (1 of 1) PTHR23304//PTHR23304:SF106 - SPOT2-RELATED // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGGTCAGGGTCAGGGTCAGGGTCAGGGTCAGGGTCAGGGTCAGGGTCA
Internal bar code:TGCGCTTTATCAGACGTAGATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1942
LEAP-Seq percent confirming:51.2821
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:TGTCCCTCTAGCTACCCCAC
Suggested primer 2:CCACCAAGTCAGGGTCCATC