Insertion junction: CLIP2.048405_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.048405
Chromosome:chromosome 3
Location:3780381
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g169550 AOX2 Alternative oxidase; (1 of 2) PTHR31803:SF3 - ALTERNATIVE OXIDASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAGCCAGCCGTTAACGGCACTTGGCTTCGTGCCGTTGCCTATGGGTGCC
Internal bar code:TACGGGGATGAATACCTCCCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2713
LEAP-Seq percent confirming:95.6522
LEAP-Seq n confirming:44
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:GGACCTTCGACAAGCTGACA
Suggested primer 2:CCTCTTGCAGTAGGGTGTGG