Insertion junction: CLIP2.048585_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.048585
Chromosome:chromosome 4
Location:1941912
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g218600 (1 of 13) IPR008942 - ENTH/VHS intron
lncRNA_TCONS_00096931 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGAAGAGCTTGCCACCTACAACGCAAGGGCGTGGGTTCTGGCATCTCA
Internal bar code:GATCGGGTTAGTTGCGCGGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:165
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:ACTCACCCACGCATGCAATA
Suggested primer 2:AATAGACCCCAACAAGCGGG