Insertion junction: CLIP2.048606_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.048606
Chromosome:chromosome 12
Location:5577831
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g531000 AMT1H,AMT8 Ammonium transporter; (1 of 8) K03320 - ammonium transporter, Amt family (amt, AMT, MEP) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTTCACGCGCATCGCCGGAACCTGCCACCGCTCAGCCTCCCGGCCCCCT
Internal bar code:GAGCGTTTCGCAGGCCAGTAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:5124
LEAP-Seq percent confirming:98.8636
LEAP-Seq n confirming:87
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:88

Suggested primers for confirmation by PCR

Suggested primer 1:CACGTCAAGCACCAAACAGG
Suggested primer 2:ACTTGCAGCTTCCTGTGGTT