Insertion junction: CLIP2.048610_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.048610
Chromosome:chromosome 3
Location:7931982
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g202300 (1 of 3) IPR000104//IPR001859 - Antifreeze protein, type I // Trypanosoma cruzi ribosomal protein P2-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCTGGATCACGTGCACAGCGCTCCTCTACACACCAGCGTGCTCGTACGT
Internal bar code:TTCATACGCCCTTCCTTTACCT

Confirmation - LEAP-Seq

LEAP-Seq distance:3940
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:48
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:51

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCGGCATTCATTGATGGG
Suggested primer 2:AGGGCGCTTCGAAACTTGTA