Insertion junction: CLIP2.048614_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.048614
Chromosome:chromosome 3
Location:6130287
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g800355 (1 of 3) PF03732//PF13650 - Retrotransposon gag protein (Retrotrans_gag) // Aspartyl protease (Asp_protease_2) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACACCGCGGCTATAGCTGATATCCGCGCGGATAGGGCCCAGGAAGCTGTT
Internal bar code:GGGAAGGTTGCCGATGACCAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1032
LEAP-Seq percent confirming:31.25
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:33
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:GACAGACCCCGAGCTTCAAA
Suggested primer 2:TATGCACGCCCTTGTGGAAT