Insertion junction: CLIP2.048728_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.048728
Chromosome:chromosome 13
Location:4134130
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g591150 HTA38,HTA22 Histone H2A; (1 of 30) K11251 - histone H2A (H2A) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATGTTGGGCAGCACACCGCCCGATGCAATGGTCACCTCGCCCAGCAGCT
Internal bar code:CCCACGGTAAGTGACCATGTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:605
LEAP-Seq percent confirming:62.5
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CTACGCTCCAACTCGGATCC
Suggested primer 2:AGTCAGGCCACCCATCTACT