Insertion junction: CLIP2.048792_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.048792
Chromosome:chromosome 7
Location:166196
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g313206 (1 of 2) 2.7.7.48 - RNA-directed RNA polymerase / RNA nucleotidyltransferase (RNA-directed) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACTGCTACTGCTGCTGGTGGCGACGGTGCTACAGCCAGTGGCGAGTTGG
Internal bar code:CGCTACGGCGCGGTGAGGAGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1079
LEAP-Seq percent confirming:55.7692
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:52

Suggested primers for confirmation by PCR

Suggested primer 1:CTACCGACAGTAGCAGGCAG
Suggested primer 2:ATTGTCCAATGCGGGTGAGT