Insertion junction: CLIP2.049023_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.049023
Chromosome:plastome
Location:95886
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802305 2716992,ChreCp041,rpoB2 (1 of 2) K03043 - DNA-directed RNA polymerase subunit beta (rpoB); RNA polymerase beta subunit II CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGATGAAATGTATGGTGCTGATGCTTCACGCAGTTTTGTTTTATCTAA
Internal bar code:GTTATTATTTTTTTGTCCGGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2454
LEAP-Seq percent confirming:52.6316
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:TGCCAATGCCATCCCATTCT
Suggested primer 2:TTGGCAGCTGGGTTGAAGAA