Insertion junction: CLIP2.049041_4

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.049041
Chromosome:chromosome 4
Location:2799783
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g223900 (1 of 2) K09313 - homeobox protein cut-like (CUTL) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCCGCGTGTGGCCCGCAGGAGCTGCGGCGGCGGGCGGAGGCGCTCCAG
Internal bar code:TGACTTGCGCGGTTTGTAGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2096
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:GAGTGCTCCTGTGTCAAGCT
Suggested primer 2:GCTGCAAAACCTGGTGGAAG