Insertion junction: CLIP2.049149_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.049149
Chromosome:chromosome 3
Location:7932325
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g202300 (1 of 3) IPR000104//IPR001859 - Antifreeze protein, type I // Trypanosoma cruzi ribosomal protein P2-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCATCGCGTCCTGTCCGCCGCCTGTGTCCGCATGGTTCGCCCCCACCAT
Internal bar code:ATGCAAGATAGTATCCAGGGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3650
LEAP-Seq percent confirming:92.8571
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:CAGGTATTCGCCGCCATACT
Suggested primer 2:TTTGTCGAGAACGCTGTCGA