Insertion junction: CLIP2.049156_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.049156
Chromosome:chromosome 11
Location:1526063
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g468700 CPLD65,HCAR1 7-hydroxymethyl chlorophyll a reductase; (1 of 1) 1.17.7.2 - 7-hydroxymethyl chlorophyll a reductase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTAACCCTCCCCACGCCACGCTCATTGCGCCCCACGCAGATCACGCCCA
Internal bar code:GCGTCCTGCCGCATACTCTACT

Confirmation - LEAP-Seq

LEAP-Seq distance:162
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGCAAGTACACGCATGGA
Suggested primer 2:TGTCCGGGTGTGTGTATGTG