Insertion junction: CLIP2.049213_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.049213
Chromosome:chromosome 11
Location:3589785
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g478050 (1 of 12) IPR000104//IPR002893 - Antifreeze protein, type I // Zinc finger, MYND-type intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGATGTGTGGCCGGCGATGGTGGCTCTTTTGGTCTAGGCACGTCCCGGG
Internal bar code:CTCTTCGGTTTTTAAGTAGCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2079
LEAP-Seq percent confirming:94.7368
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCAAGACACACGGTTTCG
Suggested primer 2:TTCGTCATCACCAGCTGCAT