Insertion junction: CLIP2.049214_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.049214
Chromosome:chromosome 9
Location:5840843
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g411600 (1 of 3) IPR000104//IPR001005//IPR009057//IPR017877//IPR017930 - Antifreeze protein, type I // SANT/Myb domain // Homeodomain-like // Myb-like domain // Myb domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGAACAGGAACTGGCTGCGAGGCGCCCGTTTGGCTCGCTGCGTCCTGCG
Internal bar code:AATACGTTTAATGGTAATCTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:965
LEAP-Seq percent confirming:65.1163
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:AAACAATGCACACGCCTGAC
Suggested primer 2:ACCAGTCGCTGTGTACATGG