Insertion junction: CLIP2.049239_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.049239
Chromosome:chromosome 16
Location:6227430
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00152018

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATGGCAGAAAAGCTGTCCTCATGTCGGTCAAGGCGGACGTCCGATAAAC
Internal bar code:GGTTAAGGGTGTGCTAATCGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:890
LEAP-Seq percent confirming:37.5
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TCCGTGAAGCGATTGTTGGA
Suggested primer 2:CTATTAGAAACCCGCCCGCT