Insertion junction: CLIP2.049347_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.049347
Chromosome:chromosome 15
Location:3420237
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre15.g801797 (1 of 73) IPR000477//IPR005135 - Reverse transcriptase domain // Endonuclease/exonuclease/phosphatase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGTGGTGGCGGAGTCCGGGCGCACATGAGTAAGCAGCGCCCGGGTGAGC
Internal bar code:TTGCGTAGATCACTTGATGACC

Confirmation - LEAP-Seq

LEAP-Seq distance:1059
LEAP-Seq percent confirming:62.8571
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:TTGGTGGCAGTTTTCGAGGT
Suggested primer 2:AGAGCCACCGGGTTATTGTG