Insertion junction: CLIP2.049356_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.049356
Chromosome:chromosome 6
Location:1612360
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g261550 (1 of 1) PF06694 - Plant nuclear matrix protein 1 (NMP1) (Plant_NMP1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCCCACCCCGGTGTATACACACACGCGGTGCTCCCAACCCTGCCCTGG
Internal bar code:GTAACAGCGATCCGAAGTCAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:3680
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:81
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:81

Suggested primers for confirmation by PCR

Suggested primer 1:CGACACAGCCAATGTTTGCA
Suggested primer 2:CAAGCACAGTCACCAAGCAC