Insertion junction: CLIP2.049416_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.049416
Chromosome:chromosome 7
Location:945337
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g319150 PTP4 Protein tyrosine phosphatase; (1 of 2) PTHR10367 - MRNA-CAPPING ENZYME intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACTGTCCTGCGCGTATTGTTCTCCATGAGCTCTTCAACATATACACACA
Internal bar code:CTATCGACAGTAATGAACTTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:267
LEAP-Seq percent confirming:62.5
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGTGAGGACCTGACCAG
Suggested primer 2:ATCAGGTAGCAGCACACCAC