Insertion junction: CLIP2.049445_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.049445
Chromosome:chromosome 13
Location:2151091
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g577650 (1 of 10) IPR000104//IPR001810 - Antifreeze protein, type I // F-box domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCCCCGGGAGTTGGCCAGTTCCCGCTCCCGCGCCACCGCCCGGATGCAA
Internal bar code:TAATAGGTTGGACGTTAGGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2081
LEAP-Seq percent confirming:55.5556
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:AACTGTTACACGGGCGAGTT
Suggested primer 2:GAGCAGCTTCAGCACCTCTA