Insertion junction: CLIP2.049499_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.049499
Chromosome:chromosome 13
Location:2576416
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g580550 HLM20 (1 of 2) K11426 - SET and MYND domain-containing protein (SMYD); putative N-methyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTCACCCGCCACGCTGCATAGGACTGCTCAGCTTGGATAGCGGCGCTGA
Internal bar code:GCCATGAGACCATTTTCCTTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:679
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GTTCTACAAACGCTTGCGGG
Suggested primer 2:CTCCAGGAGTTTTGCCTCGT