Insertion junction: CLIP2.049502_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.049502
Chromosome:chromosome 13
Location:3762063
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre13.g588736 (1 of 10) IPR000104//IPR001810 - Antifreeze protein, type I // F-box domain 5'UTR
Cre13.g588750 (1 of 14) PF04577 - Protein of unknown function (DUF563) (DUF563) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAGCACAACGAGCTAGCTTAGAACAGTTTTGAGTGCTCAAACGCTGACA
Internal bar code:TGCCCTGTGAACGTTGGGAAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:506
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGATCTGTTGCTGCTGCT
Suggested primer 2:TCCTCCCTGCCTGCTTATCT