Insertion junction: CLIP2.049684_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.049684
Chromosome:chromosome 6
Location:3835419
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278177 DNL6,LIG6 (1 of 1) PTHR10459:SF44 - ANKYRIN REPEAT-CONTAINING PROTEIN; DNA ligase 6 5'UTR
Cre06.g278178 (1 of 1) PF09495 - Protein of unknown function (DUF2462) (DUF2462) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGACTTGCGGCACTGACAACACATGCTTTCTATCACTGCACTAGGAAAA
Internal bar code:TATGTCTTTTTTATAACCCGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:4627
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:57
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:57

Suggested primers for confirmation by PCR

Suggested primer 1:TGAACTCCGCCAGTGATGAC
Suggested primer 2:CGTCCTGGTAGGGCTTGTTT