Insertion junction: CLIP2.049775_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.049775
Chromosome:chromosome 10
Location:5244079
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g456300 NAC2,MBD1 (1 of 1) IPR003107//IPR013026//IPR019734 - HAT (Half-A-TPR) repeat // Tetratricopeptide repeat-containing domain // Tetratricopeptide repeat; PsbD mRNA maturation factor Nac2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCATGGCGCTGCCGCCTCTGGATGCAGTGCGCCGCCCCATGCCCGATGCC
Internal bar code:GCCGCGCTGATCATGATGCGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2916
LEAP-Seq percent confirming:91.8919
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:CCATCTCCTCACGCCCTTTT
Suggested primer 2:TCTCCATGCCTCCTCTCACA