Insertion junction: CLIP2.049775_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.049775
Chromosome:chromosome 10
Location:5244088
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g456300 NAC2,MBD1 (1 of 1) IPR003107//IPR013026//IPR019734 - HAT (Half-A-TPR) repeat // Tetratricopeptide repeat-containing domain // Tetratricopeptide repeat; PsbD mRNA maturation factor Nac2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCATAATAATCCGCGTCCTGGTCCTCCAACCGCCTCCGTGGCAATGGC
Internal bar code:GCCGCGCTGATCATGATGCGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1263
LEAP-Seq percent confirming:69.2308
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:TCTCCATGCCTCCTCTCACA
Suggested primer 2:CCATCTCCTCACGCCCTTTT