Insertion junction: CLIP2.049788_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.049788
Chromosome:chromosome 16
Location:5701012
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g680900 RPB1 (1 of 1) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A); DNA-directed RNA polymerase II, largest subunit intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGCGCAATGGCGGGAAAAACGCAGCGGGAAGTGTCAGATGCGGGTCGGA
Internal bar code:TCTAACCTCCGGCCCACGTCCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1758
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GCGACGAGATGAACATGCAC
Suggested primer 2:CACCAATGCCGATGCTCATG