Insertion junction: CLIP2.050031_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.050031
Chromosome:chromosome 12
Location:4033850
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g516300 CGL154 Conserved in the Green Lineage; (1 of 11) PF13229 - Right handed beta helix region (Beta_helix) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGTGCTATCGTGTGGGCGAGGAGTGGATCCAGAAACGCCTGTACCAGGC
Internal bar code:TACGTTCCAAGGTAGGTTGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:3785
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:95
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:95

Suggested primers for confirmation by PCR

Suggested primer 1:GATCACGCCATTCGCTTCAC
Suggested primer 2:TGCCGTAGTAATCATCGCCC