Insertion junction: CLIP2.050037_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.050037
Chromosome:chromosome 3
Location:7446747
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g205850 MAE6,MFT6 MATE efflux family protein; (1 of 3) PTHR11206//PTHR11206:SF95 - MULTIDRUG RESISTANCE PROTEIN // MULTI ANTIMICROBIAL EXTRUSION FAMILY PROTEIN CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGATGGCCTGTGGCACCATGTACACCCAGCCGCTGACGGTGAGGCAGA
Internal bar code:GACTTGGTGGCAAGGCGAATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:394
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GCAGTGATGTCGTGTCTGGA
Suggested primer 2:CAATGGTATTGAGCGCCGTG