Insertion junction: CLIP2.050048_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.050048
Chromosome:chromosome 6
Location:1603418
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g261450 High mobility group protein; (1 of 1) K10802 - high mobility group protein B1 (HMGB1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCCTTGCCCTCAGTCTCCTTCCGCTTGCCCTTGGGCTCTGCAGTCAACA
Internal bar code:GGATAGCACATACACATGGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1060
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:GTATACTCGTGTGGGCCTCG
Suggested primer 2:CCGCCTTCTCATCGTACTCC