Insertion junction: CLIP2.050084_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.050084
Chromosome:chromosome 9
Location:6484031
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g415400 (1 of 1) PF08314 - Secretory pathway protein Sec39 (Sec39) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGATGGTGCCGGGAACGGCCTACCGTAAGAACTTACGGTCTCTCTGACC
Internal bar code:GGTGAAGTGACATGATAATGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2250
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:GGCCCTGTTCACATACGTCA
Suggested primer 2:GAAACAGGTCGCTTTCCAGC