Insertion junction: CLIP2.050092_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.050092
Chromosome:chromosome 3
Location:6525232
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g194100 MAPKKK3 (1 of 1) PF14381 - Ethylene-responsive protein kinase Le-CTR1 (EDR1); Mitogen-Activated Protein Kinase Kinase Kinase outside_mRNA
Cre03.g800364 (1 of 3) PTHR23257:SF518 - DUAL SPECIFICITY PROTEIN KINASE SHKD CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGCCGAAGCTGAACACGTCGGACTTTTCGTCGCAGCGCTCGGAGCGCAA
Internal bar code:GTAAACGTTTATGTAACTCACT

Confirmation - LEAP-Seq

LEAP-Seq distance:998
LEAP-Seq percent confirming:41.6667
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GGTACGAGAGAGAACGAGCG
Suggested primer 2:CAGAACGGACGTCAACCTCA