Insertion junction: CLIP2.050092_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.050092
Chromosome:chromosome 3
Location:6525240
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g194100 MAPKKK3 (1 of 1) PF14381 - Ethylene-responsive protein kinase Le-CTR1 (EDR1); Mitogen-Activated Protein Kinase Kinase Kinase outside_mRNA
Cre03.g800364 (1 of 3) PTHR23257:SF518 - DUAL SPECIFICITY PROTEIN KINASE SHKD CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGGCGTCATCCTGTACGAGCTGGTCACGGGCCGGGAGCCCTGGGAGGA
Internal bar code:ATTTAATTATGTCAGGTGTCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:4913
LEAP-Seq percent confirming:86.6667
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:CAGAACGGACGTCAACCTCA
Suggested primer 2:GGTACGAGAGAGAACGAGCG