Insertion junction: CLIP2.050102_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.050102
Chromosome:chromosome 1
Location:3714051
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g024250 HEL4 DEAH box ATP-dependent RNA helicase; (1 of 1) 1.14.13.101 - Senecionine N-oxygenase / Senecionine monooxygenase (N-oxide-forming) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGTGGACCACTCCATTCCCGACCGCCGCACCTCATACTCGGGCCGGCCC
Internal bar code:GTTTTAGACCATAATCTAGTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:299
LEAP-Seq percent confirming:8.33333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCACCATCTCCTCCTCCA
Suggested primer 2:AGCACCCGTCAGAGTCTTTG