Insertion junction: CLIP2.050176_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.050176
Chromosome:chromosome 15
Location:606528
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre15.g636600 FAP391 (1 of 8) PF00560 - Leucine Rich Repeat (LRR_1); Flagellar Associated Leucine Rich Repeat Protein 391 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTAGCGACATCCCGTCGGCTGGGGGCCCCGTTGGCCACCCCTCTACGG
Internal bar code:GTGTGTCTGGGTTCTAAATCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:593
LEAP-Seq percent confirming:47.0588
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CAGAATCGGCGCGAAAGAAG
Suggested primer 2:AATGGAAGAGAACAGCCGCA