Insertion junction: CLIP2.050275_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.050275
Chromosome:chromosome 12
Location:4081139
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g801400 (1 of 31) PF03732 - Retrotransposon gag protein (Retrotrans_gag) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAACTCCTCCTGATTCGCCTCAAAGCGCTCTTGGAAAGTGATTTGGAAC
Internal bar code:ACGTTATTTTGATCGTGGTTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:3681
LEAP-Seq percent confirming:52.6316
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCGTAGTTGGTATCGAGA
Suggested primer 2:GTTGCACGTCATGATGGTCG