Insertion junction: CLIP2.050301_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.050301
Chromosome:plastome
Location:94660
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802305 2716992,ChreCp041,rpoB2 (1 of 2) K03043 - DNA-directed RNA polymerase subunit beta (rpoB); RNA polymerase beta subunit II 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCGGAGCAGGCAGTGGCGGTACCACTGCCACTAAAATTTATTTGCCCGA
Internal bar code:TTTCTGGGTAGATAGCAGAAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:137
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CCAACTGAGCTAAGCAGGCT
Suggested primer 2:AGAATGGGATGGCATTGGCA