Insertion junction: CLIP2.050342_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.050342
Chromosome:chromosome 3
Location:4629727
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g176900 (1 of 2) 2.1.1.282//2.5.1.114 - tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))- methyltransferase / tRNA-yW synthesizing enzyme-3 // tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / tRNA-yW synthesizing enzyme-2 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCCAACAACGACATACACATACACGCAGCACCCACGCCCTGTGTGCCC
Internal bar code:GTGCAAACGCTGTCGTCGAGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:264
LEAP-Seq percent confirming:3.84615
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:25
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGGGACAGGCGATGACTT
Suggested primer 2:TAGTAATACGCAGGCCGCAG