Insertion junction: CLIP2.050396_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.050396
Chromosome:chromosome 5
Location:835818
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g246100 (1 of 1) IPR019887 - Transcription regulator AsnC-type, C-terminal intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCAAACACCCGCCCCTTCCTCCCCGACCATTCACCCACCCTCTTCCGC
Internal bar code:ATGGGTGGGACTTAGATTTTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:155
LEAP-Seq percent confirming:44.4444
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CATTATCAATGGTGGCGGCG
Suggested primer 2:ATGTTGCCGCCGTTGTAGTA