Insertion junction: CLIP2.050398_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.050398
Chromosome:chromosome 9
Location:3458011
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g396028 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCAACCTCGGCCGGCCCAGCCCGGCCCAGCCCAGCAGCCCGAAGCCCTC
Internal bar code:GTAATTAGTTGGGATAGCACCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1397
LEAP-Seq percent confirming:81.3953
LEAP-Seq n confirming:35
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGTCCATCACAACATCGC
Suggested primer 2:CGCTGTTGGTGGAGTTGTTG