Insertion junction: CLIP2.050406_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.050406
Chromosome:chromosome 11
Location:3588945
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g478050 (1 of 12) IPR000104//IPR002893 - Antifreeze protein, type I // Zinc finger, MYND-type CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACGCCGCCCCAGCGCCGCCAGCGTGGGGTACCAGTGCCGCGCCGCCAGC
Internal bar code:TTGCCTTAGGGTAGGGGACGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1239
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:CCCAATGACGCGGAGTTACT
Suggested primer 2:CATGGGCATGCGTGTATGTG