Insertion junction: CLIP2.050460_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.050460
Chromosome:chromosome 12
Location:6841099
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g801457 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGACTTTCGCCCTCCTTGCCCAGCCAGGCCGGCAACCCTGGAAGATGCTC
Internal bar code:TTCTAAATCTTCGTGGGCCCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1205
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CAGAAAGGACGTCAGTGGCT
Suggested primer 2:AGCCACTGACGTCCTTTCTG