Insertion junction: CLIP2.050616_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.050616
Chromosome:chromosome 13
Location:4196073
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g591501 PUS2 (1 of 2) PTHR11142:SF0 - TRNA PSEUDOURIDINE SYNTHASE-LIKE 1; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCAACCCGCCTGTGCCGAATGCACGTAGGGTTTTGCTGTACCCCGAGCT
Internal bar code:GGGATGTAGTATACACTAATTA

Confirmation - LEAP-Seq

LEAP-Seq distance:3202
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:ACCACCACCCTTTCTGCAAA
Suggested primer 2:CCCCCTGCACCCATATCATC