Insertion junction: CLIP2.050626_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.050626
Chromosome:chromosome 17
Location:2507370
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g715700 VTC3,PPP44,PP2C5 (1 of 1) PF00481//PF07714 - Protein phosphatase 2C (PP2C) // Protein tyrosine kinase (Pkinase_Tyr); protein phosphatase 2C-like CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCCGGCACCGCCGTCACGCCCACGCCCGAGCCCAGCGCCGCCTCCGCGC
Internal bar code:CCGCGAACACGGGAGAAAATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2623
LEAP-Seq percent confirming:45.4545
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:AGGACCGAACCGTCATCCTA
Suggested primer 2:GTGTGTATCCGAGGCGTAGG