Insertion junction: CLIP2.050633_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.050633
Chromosome:chromosome 11
Location:4040850
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g480700 (1 of 2) IPR000104//IPR000945 - Antifreeze protein, type I // Dopamine beta-hydroxylase-related intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGGAGCACAGGCAGAGGCGTTAGTTGCAAGCGATAATACTTATGGAGTT
Internal bar code:GTTATGGCAGGAGCGGTGATTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1062
LEAP-Seq percent confirming:78.9474
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TCGGGGATGGGGACTATTGT
Suggested primer 2:TTGTAAAAGGGCCCAGCGAT